Basic Information
Locus ID:
jg16353
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Rho GTPase-activating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 2242887 | 2257494 | - | jg16353 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 98,458.69 Da | 51.96 | 76.29 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 21 | 120 | 8.4169E-12 | - |
| CDD | cd00159 | RhoGAP | 181 | 338 | 4.13666E-30 | - |
| Pfam | PF00169 | PH domain | 20 | 124 | 2.3E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 181 | 345 | 2.5E-23 | IPR000198 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 632 | 712 | 6.3E-21 | IPR025757 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 181 | 395 | 1.28E-28 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 15 | 125 | 5.48E-17 | - |
| Gene3D | G3DSA:2.30.29.30 | - | 10 | 126 | 5.7E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 150 | 394 | 3.6E-38 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 178 | 389 | 1.2E-18 | IPR000198 |
| SMART | SM00233 | PH_update | 19 | 127 | 1.8E-15 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 172 | 392 | 26.916885 | IPR000198 |
| ProSiteProfiles | PS50003 | PH domain profile. | 18 | 125 | 15.1402 | IPR001849 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 562 | 593 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 807 | - | - |
| Coils | Coil | Coil | 681 | 715 | - | - |
| Coils | Coil | Coil | 841 | 861 | - | - |
| Coils | Coil | Coil | 622 | 663 | - | - |
| Coils | Coil | Coil | 201 | 228 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_011090172.2 | rho GTPase-activating protein 7-like [Sesamum indicum] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9U130 | rho GTPase-activating protein 7-like OS=Sesamum indicum OX=4182 GN=LOC105170930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology