Basic Information
Locus ID:
jg16251
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Transcriptional corepressor LEUNIG-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 1461067 | 1480989 | + | jg16251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.36 | 110,941.52 Da | 48.56 | 72.03 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 477 | 751 | 1.92119E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 547 | 4.9E-5 | IPR001680 |
| Pfam | PF02234 | Cyclin-dependent kinase inhibitor | 967 | 1010 | 8.6E-15 | IPR003175 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 505 | 0.0023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 637 | 672 | 0.014 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 36 | 2.7E-6 | IPR006594 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 477 | 750 | 1.04E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 448 | 606 | 5.8E-31 | IPR015943 |
| Gene3D | G3DSA:4.10.365.10 | p27 | 955 | 1012 | 2.3E-9 | IPR044898 |
| Gene3D | G3DSA:2.130.10.10 | - | 607 | 800 | 4.5E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 634 | 672 | 4.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 675 | 714 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 716 | 756 | 110.0 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 467 | 505 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 508 | 547 | 2.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 551 | 591 | 0.0012 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 515 | 547 | 12.914561 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 641 | 681 | 9.305395 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 515 | 547 | 10.732868 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 480 | 514 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.24612 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 492 | 506 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 392 | - | - |
| Coils | Coil | Coil | 85 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_020550450.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Sesamum indicum] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V2Y7 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105165724 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology