Basic Information
Locus ID:
jg16228
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Lissencephaly type-1-like homology motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr31 | 1256139 | 1261331 | - | jg16228 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 58,300.38 Da | 43.52 | 92.22 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 217 | 511 | 3.53792E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 264 | 297 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 216 | 252 | 2.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 434 | 469 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 340 | 0.091 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 476 | 511 | 3.2E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 212 | 511 | 6.64E-63 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 209 | 512 | 8.4E-66 | IPR015943 |
| SMART | SM00320 | WD40_4 | 427 | 469 | 0.79 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 341 | 2.7E-5 | IPR001680 |
| SMART | SM00667 | Lish | 15 | 47 | 0.0019 | IPR006594 |
| SMART | SM00320 | WD40_4 | 385 | 423 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 472 | 512 | 1.6E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 8.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 343 | 383 | 4.8 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 11.711506 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 253 | 9.09833 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 48 | 105 | 8.685859 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 479 | 511 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 479 | 518 | 12.182859 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 15 | 47 | 9.372236 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 301 | 10.15287 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G43920.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011083080.1 | WD repeat-containing protein 26 [Sesamum indicum] | 0 |
| Q9FND4 | WD repeat-containing protein WDS homolog OS=Arabidopsis thaliana OX=3702 GN=WDS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TGG9 | WD repeat-containing protein 26 OS=Sesamum indicum OX=4182 GN=LOC105165688 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology