Basic Information
Locus ID:
jg15785
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 14565350 | 14567337 | + | jg15785 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.64 | 37,412.67 Da | 65.70 | 67.35 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 198 | 240 | 2.41045E-22 | - |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 1.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 178 | 250 | 7.54E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 161 | 246 | 1.0E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 246 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 276 | - | - |
| Coils | Coil | Coil | 243 | 263 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_011070061.1 | probable E3 ubiquitin-protein ligase RHC1A [Sesamum indicum] | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SLW2 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105155802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology