Basic Information
Locus ID:
jg15725
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 13924905 | 13926182 | + | jg15725 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 47,053.82 Da | 46.64 | 82.33 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 133 | 176 | 2.69459E-20 | - |
| Pfam | PF13639 | Ring finger domain | 133 | 176 | 2.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 112 | 181 | 5.81E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 183 | 6.0E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 175 | 6.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 176 | 12.636808 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 227 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 406 | 425 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011069943.1 | RING-H2 finger protein ATL43-like [Sesamum indicum] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SS71 | RING-H2 finger protein ATL43-like OS=Sesamum indicum OX=4182 GN=LOC105155720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology