Basic Information
Locus ID:
jg15641
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 12514520 | 12519101 | - | jg15641 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 54,759.11 Da | 54.17 | 82.14 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 217 | 267 | 1.3E-8 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 202 | 2.7E-16 | IPR020683 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 15 | 75 | 1.0E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 375 | 1.45E-6 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 14 | 270 | 8.93E-52 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 140 | 282 | 4.4E-26 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 4 | 139 | 4.1E-33 | IPR036770 |
| SMART | SM00248 | ANK_2a | 217 | 246 | 1.7E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 141 | 0.079 | IPR002110 |
| SMART | SM00248 | ANK_2a | 250 | 280 | 1700.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 4.0E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 174 | 203 | 4.2E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.0053 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 319 | 369 | 9.582937 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 13.41059 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 9.701759 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 217 | 249 | 12.075089 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 10.07184 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 77 | 108 | 8.799692 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 174 | 202 | 11.797739 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 217 | 248 | 10.869141 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 9.72461 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 174 | 206 | 12.31548 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 12.301834 | - |
| PRINTS | PR01415 | Ankyrin repeat signature | 112 | 127 | 9.6E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 190 | 204 | 9.6E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_011069845.1 | probable E3 ubiquitin-protein ligase XBOS32 [Sesamum indicum] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SS00 | probable E3 ubiquitin-protein ligase XBOS32 OS=Sesamum indicum OX=4182 GN=LOC105155640 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology