Basic Information
Locus ID:
jg15506
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8639171 | 8651111 | + | jg15506 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 100,356.14 Da | 45.94 | 76.36 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 376 | 522 | 1.2E-53 | IPR033443 |
| Pfam | PF16953 | Protein-only RNase P | 563 | 789 | 3.2E-74 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 183 | 244 | 1.6E-15 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 581 | 755 | 5.9E-195 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 374 | 792 | 5.9E-195 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 435 | 469 | 9.086975 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_011093599.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Sesamum indicum] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UH97 | ribonuclease P OS=Sesamum indicum OX=4182 GN=LOC105173525 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology