Basic Information
Locus ID:
jg15491
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 8238587 | 8239903 | - | jg15491 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 50,500.97 Da | 69.25 | 77.65 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 124 | 167 | 1.245E-18 | - |
| Pfam | PF13639 | Ring finger domain | 124 | 167 | 4.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 105 | 173 | 1.32E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 174 | 3.9E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 125 | 166 | 7.8E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 167 | 12.69582 | IPR001841 |
| Coils | Coil | Coil | 383 | 403 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28890.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_020553315.1 | E3 ubiquitin-protein ligase ATL42 [Sesamum indicum] | 0 |
| Q5XF85 | E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8M8V9Z0 | E3 ubiquitin-protein ligase ATL42 OS=Sesamum indicum OX=4182 GN=LOC105173540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology