Basic Information
Locus ID:
jg15413
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 6386125 | 6401268 | + | jg15413 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.47 | 50,845.81 Da | 47.99 | 79.09 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00154 | recA bacterial DNA recombination protein | 61 | 338 | 1.4E-101 | IPR013765 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 61 | 338 | 5.43E-42 | IPR027417 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 340 | 390 | 1.01E-8 | IPR023400 |
| Gene3D | G3DSA:3.40.50.300 | - | 125 | 403 | 1.3E-95 | IPR027417 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 57 | 390 | 1.4E-118 | IPR013765 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 272 | 343 | 26.129221 | IPR020587 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 88 | 262 | 24.300957 | IPR020588 |
| ProSitePatterns | PS00321 | recA signature. | 284 | 292 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 314 | 343 | 1.4E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 161 | 190 | 1.4E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 367 | 384 | 1.4E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 195 | 224 | 1.4E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 281 | 309 | 1.4E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 233 | 262 | 1.4E-75 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19490.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_011077996.1 | DNA repair protein recA homolog 3, mitochondrial [Sesamum indicum] | 0 |
| Q9ZUP2 | DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At2g19490 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2G9HZN1 | DNA repair protein RAD51/RHP55 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04326 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology