Basic Information
Locus ID:
jg15332
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 5439551 | 5450325 | - | jg15332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.15 | 44,148.93 Da | 46.57 | 71.53 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 48 | 118 | 7.09091E-38 | - |
| CDD | cd12619 | RRM2_PUB1 | 132 | 206 | 5.46845E-52 | - |
| CDD | cd12354 | RRM3_TIA1_like | 252 | 326 | 1.01413E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 254 | 320 | 1.0E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 48 | 114 | 5.4E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 133 | 203 | 1.3E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 240 | 330 | 3.12E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 45 | 209 | 1.08E-44 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 128 | 2.5E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 231 | 330 | 3.0E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 129 | 210 | 1.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 253 | 322 | 1.7E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 47 | 116 | 3.4E-17 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 132 | 205 | 0.0063 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 132 | 205 | 3.8E-24 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 253 | 322 | 11.0 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 131 | 209 | 17.387012 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 46 | 120 | 15.391531 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 235 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_051132246.1 | oligouridylate-binding protein 1-like isoform X2 [Andrographis paniculata] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GT05 | Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_19005 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology