Basic Information
Locus ID:
jg15180
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3921800 | 3933151 | - | jg15180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.50 | 113,649.15 Da | 48.41 | 86.97 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 467 | 993 | 1.0069E-62 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 466 | 992 | 2.4E-81 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 464 | 994 | 2.94E-105 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 457 | 664 | 3.4E-65 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 741 | 995 | 1.8E-52 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 466 | 995 | 55.095329 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 467 | 482 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 938 | 955 | - | IPR018200 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_020553724.1 | ubiquitin carboxyl-terminal hydrolase 8-like [Sesamum indicum] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8M8VBP5 | Ubiquitin carboxyl-terminal hydrolase OS=Sesamum indicum OX=4182 GN=LOC105174199 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology