Basic Information
Locus ID:
jg15141
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3584473 | 3585735 | - | jg15141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 47,492.58 Da | 48.73 | 103.24 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 4.57456E-22 | - |
| Pfam | PF04564 | U-box domain | 6 | 75 | 4.7E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 99 | 386 | 1.9E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 76 | 1.11E-27 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 96 | 400 | 3.7E-15 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 77 | 2.5E-29 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 9 | 74 | 8.8E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 81 | 34.172703 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11840.1 | plant U-box 24. Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011094534.1 | E3 ubiquitin-protein ligase PUB24-like [Sesamum indicum] | 0 |
| Q9SF15 | E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana OX=3702 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GP45 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_20379 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology