Basic Information
Locus ID:
jg15140
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 3577600 | 3578835 | - | jg15140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.89 | 45,490.99 Da | 51.30 | 106.30 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 10 | 53 | 1.25349E-22 | - |
| Pfam | PF04564 | U-box domain | 6 | 77 | 1.1E-21 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 78 | 9.64E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 95 | 388 | 1.95E-17 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 84 | 4.6E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 94 | 251 | 1.8E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 252 | 394 | 1.1E-5 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 9 | 73 | 9.4E-33 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 5 | 80 | 42.027687 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_011094237.1 | E3 ubiquitin-protein ligase PUB22-like [Sesamum indicum] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UIV5 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105173992 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology