Basic Information
Locus ID:
jg15008
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
TPL-binding domain in jasmonate signalling
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2435281 | 2454319 | - | jg15008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 130,902.43 Da | 44.99 | 77.10 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 780 | 805 | 1.9E-7 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 582 | 628 | 4.4E-15 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 285 | 340 | 2.1E-13 | IPR032308 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 860 | 923 | 1.57E-10 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 640 | 667 | 1.89E-6 | IPR011011 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 1014 | 1115 | 8.38E-6 | IPR016181 |
| Gene3D | G3DSA:3.40.630.30 | - | 966 | 1137 | 6.1E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 865 | 927 | 3.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 634 | 716 | 4.2E-9 | IPR013083 |
| SMART | SM00249 | PHD_3 | 869 | 926 | 5.8E-6 | IPR001965 |
| SMART | SM00249 | PHD_3 | 785 | 821 | 32.0 | IPR001965 |
| SMART | SM00249 | PHD_3 | 645 | 705 | 3.1 | IPR001965 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 415 | 457 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 75 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36720.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 0 |
| RefSeq | XP_011094567.1 | uncharacterized protein LOC105174236 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9HVC8 | Histone acetyltransferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology