Basic Information
Locus ID:
jg14991
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 2338931 | 2341158 | - | jg14991 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 32,556.83 Da | 49.58 | 57.29 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 166 | 206 | 5.4E-8 | IPR027370 |
| Pfam | PF14599 | Zinc-ribbon | 213 | 271 | 4.2E-26 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 30 | 111 | 2.2E-18 | IPR008913 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 26 | 100 | 3.4E-16 | IPR037274 |
| SUPERFAMILY | SSF57850 | RING/U-box | 163 | 218 | 1.5E-9 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 102 | 159 | 2.88E-19 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 237 | 281 | 2.8E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 159 | 229 | 2.8E-10 | IPR013083 |
| SMART | SM00184 | ring_2 | 166 | 208 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 101 | 165 | 34.167442 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 23 | 99 | 24.448526 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 166 | 209 | 11.913911 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22920.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_011094586.1 | E3 ubiquitin-protein ligase MIEL1-like [Sesamum indicum] | 0 |
| Q9FFB6 | E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HVB6 | Zn-finger protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_05835 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology