Basic Information
Locus ID:
jg14930
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1835844 | 1838318 | + | jg14930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 79,833.71 Da | 37.65 | 88.17 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12854 | PPR repeat | 405 | 434 | 1.2E-7 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 442 | 489 | 1.3E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 549 | 594 | 2.3E-10 | IPR002885 |
| Pfam | PF13812 | Pentatricopeptide repeat domain | 502 | 542 | 1.1E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 372 | 397 | 0.26 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 214 | 262 | 3.5E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 288 | 315 | 0.6 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 187 | 336 | 2.4E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 494 | 685 | 1.6E-32 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 363 | 493 | 9.0E-32 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 372 | 398 | 0.0018 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 219 | 251 | 1.6E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 409 | 434 | 4.9E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 480 | 513 | 1.8E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 551 | 585 | 2.1E-9 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 515 | 543 | 1.9E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 444 | 479 | 7.0E-9 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 442 | 477 | 11.355965 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 407 | 441 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 215 | 249 | 10.840783 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 478 | 512 | 11.147699 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 369 | 399 | 8.758137 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 513 | 543 | 9.45966 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 549 | 583 | 13.42765 | IPR002885 |
| Coils | Coil | Coil | 112 | 132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09650.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. | 0 |
| RefSeq | XP_051132285.1 | pentatricopeptide repeat-containing protein At3g09650, chloroplastic [Andrographis paniculata] | 0 |
| Q9SF38 | Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HCF152 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HMG1 | Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08852 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14930 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14177 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030219 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27582, Sbi_jg32939 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7719 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012164 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71543, Sgl75119 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004487, gene:ENSEOMG00000035057 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0017710, CQ.Regalona.r1.7BG0019230 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30271930 |
| Apiaceae | Apium graveolens | 1 | Ag4G01600 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G002890 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702861 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_02.228.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G29753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09650.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020113m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07980.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g055220.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1279 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G1307 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g15790 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0779s00006.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g33050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1379 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006352 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G08536 |
| Poaceae | Echinochloa crus-galli | 2 | CH01.3982, CH02.3616 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9BG0695360 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0466520.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003812 |
| Poaceae | Oryza coarctata | 1 | Oco01G021030 |
| Poaceae | Oryza sativa | 2 | LOC_Os11g01210.1, LOC_Os12g01210.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G241400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0103646, Pt_Chr0705186 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022510 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G268900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG025900, gene_TRIDC5BG027020 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G155800.1, TraesCS5B02G154011.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb156000_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-40101, nbis-gene-54547 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g17516, Zma_g25436 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG16.1116, evm.TU.LG20.1439 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g36010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.841 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4358 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18783 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9957 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000009l.326 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-21859 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5890 |
| Salicaceae | Populus euphratica | 1 | populus_peu25797 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630102 |
| Solanaceae | Solanum chilense | 1 | SOLCI000383600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107031406, gene-LOC107031500 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_6768 |
| Tamaricaceae | Tamarix chinensis | 1 | TC07G0644 |
| Zosteraceae | Zostera marina | 1 | Zosma01g18650.v3.1 |