Basic Information
Locus ID:
jg14869
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1488081 | 1491385 | + | jg14869 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 100,601.88 Da | 52.94 | 68.74 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 683 | 721 | 0.07 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 536 | 573 | 2.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 495 | 531 | 6.5E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 393 | 425 | 7.7E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 388 | 724 | 1.28E-54 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 377 | 761 | 2.8E-59 | IPR015943 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 8.3E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 680 | 721 | 0.0043 | IPR001680 |
| SMART | SM00320 | WD40_4 | 493 | 531 | 1.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 573 | 4.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 641 | 679 | 84.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 575 | 614 | 2.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 540 | 576 | 13.248743 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 435 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 500 | 534 | 11.840134 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 428 | 11.365591 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 540 | 576 | 10.996502 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 698 | 730 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 500 | 540 | 15.120162 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 518 | 532 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 518 | 532 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 413 | 427 | 1.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 560 | 574 | 1.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 836 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 839 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 153 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 781 | 798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 772 | 805 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 203 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G37670.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011095202.2 | WD repeat-containing protein 44 [Sesamum indicum] | 0 |
| Q5JSH3 | WD repeat-containing protein 44 OS=Homo sapiens OX=9606 GN=WDR44 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9H384 | WD40 repeat-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15437 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology