Basic Information
Locus ID:
jg14799
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1015704 | 1029279 | - | jg14799 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.85 | 156,831.17 Da | 46.73 | 83.74 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 106 | 143 | 6.9E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 396 | 426 | 0.11 | IPR001680 |
| Pfam | PF07731 | Multicopper oxidase | 1318 | 1399 | 7.1E-16 | IPR011706 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 32 | 521 | 2.93E-34 | IPR036322 |
| SUPERFAMILY | SSF49503 | Cupredoxins | 1320 | 1400 | 1.64E-13 | IPR008972 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 401 | 734 | 4.49E-43 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 349 | 655 | 7.5E-33 | IPR015943 |
| Gene3D | G3DSA:2.60.40.420 | - | 1278 | 1425 | 1.5E-19 | IPR008972 |
| Gene3D | G3DSA:2.130.10.10 | - | 661 | 754 | 2.3E-11 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 30 | 300 | 4.0E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 330 | 364 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 44 | 99 | 150.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 186 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 688 | 9.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 259 | 296 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 552 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 595 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 457 | 497 | 13.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 102 | 143 | 1.9E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 691 | 730 | 2.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 604 | 642 | 9.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 0.23 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 413 | 427 | 8.67045 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 698 | 739 | 10.475033 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 934 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 975 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 1011 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 863 | 882 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 917 | 940 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 976 | 1001 | - | - |
| Coils | Coil | Coil | 1090 | 1110 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G09080.4 | - | 0 |
| RefSeq | XP_011094969.1 | mitogen-activated protein kinase-binding protein 1 [Sesamum indicum] | 0 |
| Q3U3T8 | WD repeat-containing protein 62 OS=Mus musculus OX=10090 GN=Wdr62 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UAW3 | mitogen-activated protein kinase-binding protein 1 OS=Sesamum indicum OX=4182 GN=LOC105174536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14799 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30285450 |
| Apiaceae | Apium graveolens | 1 | Ag5G02363 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G25194 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G09080.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10022253m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g07530.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g058390.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G1051 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl08G1076, Cgl08G1077 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.1010s00004.v1.0 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.1069 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00006461 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G09988 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1767 |
| Salicaceae | Populus euphratica | 1 | populus_peu11401 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132630690 |
| Solanaceae | Solanum chilense | 1 | SOLCI000172200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029641 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_4371 |
| Tamaricaceae | Tamarix chinensis | 1 | TC02G1795 |