Basic Information
Locus ID:
jg14788
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 918546 | 926410 | + | jg14788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 95,046.89 Da | 44.36 | 87.63 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10845 | DSRM_RNAse_III_family | 658 | 717 | 2.7248E-11 | - |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 250 | 367 | 2.4E-8 | IPR004274 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 656 | 717 | 3.7E-7 | IPR014720 |
| SUPERFAMILY | SSF56784 | HAD-like | 135 | 389 | 1.48E-19 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 655 | 717 | 1.98E-13 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 652 | 723 | 1.6E-10 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 135 | 407 | 1.8E-27 | IPR023214 |
| SMART | SM00577 | forpap2 | 241 | 374 | 4.1E-9 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 654 | 718 | 1.9E-9 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 139 | 390 | 16.357355 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 653 | 719 | 13.640444 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 622 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.2 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_011094992.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X2 [Sesamum indicum] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9UAX7 | protein-serine/threonine phosphatase OS=Sesamum indicum OX=4182 GN=LOC105174550 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology