Basic Information
Locus ID:
jg14755
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
PDC3
Description:
Belongs to the TPP enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 668255 | 671070 | - | jg14755 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 61,738.89 Da | 31.60 | 92.98 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 379 | 561 | 2.54116E-88 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 47 | 208 | 4.55126E-90 | - |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 424 | 548 | 5.1E-14 | IPR011766 |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 241 | 358 | 2.2E-20 | IPR012000 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 44 | 212 | 2.2E-35 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 44 | 218 | 2.03E-44 | IPR029061 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 381 | 573 | 6.25E-41 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 230 | 365 | 6.98E-30 | IPR029035 |
| Gene3D | G3DSA:3.40.50.970 | - | 373 | 560 | 9.0E-56 | - |
| Gene3D | G3DSA:3.40.50.1220 | - | 231 | 369 | 3.9E-32 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 40 | 216 | 8.5E-61 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 39 | 368 | 5.6E-122 | IPR012110 |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 365 | 573 | 3.1E-74 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G54960.1 | pyruvate decarboxylase-2. pyruvate decarboxylase-2 | 0 |
| RefSeq | XP_011095042.1 | pyruvate decarboxylase 1 [Sesamum indicum] | 0 |
| Q9FFT4 | Pyruvate decarboxylase 2 OS=Arabidopsis thaliana OX=3702 GN=PDC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HQQ1 | pyruvate decarboxylase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology