Basic Information
Locus ID:
jg14677
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 137968 | 152641 | + | jg14677 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.03 | 111,735.41 Da | 49.40 | 83.68 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 268 | 596 | 9.58429E-82 | - |
| CDD | cd18793 | SF2_C_SNF | 842 | 951 | 1.23964E-53 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 289 | 673 | 1.8E-64 | IPR000330 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 840 | 941 | 5.1E-15 | IPR001650 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 711 | 754 | 2.2E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 708 | 759 | 2.02E-10 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 1000 | 2.66E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 256 | 596 | 7.97E-43 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 242 | 326 | 2.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 611 | 1001 | 9.5E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 360 | 451 | 2.3E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 700 | 763 | 1.7E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 452 | 608 | 1.5E-30 | IPR038718 |
| SMART | SM00184 | ring_2 | 712 | 752 | 0.0033 | IPR001841 |
| SMART | SM00487 | ultradead3 | 264 | 566 | 3.5E-25 | IPR014001 |
| SMART | SM00490 | helicmild6 | 858 | 941 | 5.6E-15 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 282 | 558 | 11.728838 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 712 | 748 | 10.822189 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 833 | 994 | 13.631013 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 727 | 736 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 33 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_011095177.1 | helicase-like transcription factor CHR28 [Sesamum indicum] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UBE3 | helicase-like transcription factor CHR28 OS=Sesamum indicum OX=4182 GN=LOC105174691 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology