Basic Information
Locus ID:
jg14653
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 12112040 | 12126309 | + | jg14653 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 92,153.51 Da | 46.38 | 68.80 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 145 | 195 | 9.92147E-15 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 215 | 276 | 4.3E-15 | IPR002867 |
| Pfam | PF04483 | Protein of unknown function (DUF565) | 758 | 816 | 1.1E-19 | IPR007572 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 292 | 340 | 2.0E-8 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 223 | 1.24E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 215 | 283 | 2.09E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 343 | 1.3E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 227 | 4.8E-16 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 272 | 527 | 5.9E-84 | - |
| SMART | SM00647 | ibrneu5 | 289 | 350 | 0.062 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 214 | 276 | 1.6E-21 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 189 | 9.184606 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 141 | 354 | 49.529961 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 258 | 267 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 564 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_011077125.1 | probable E3 ubiquitin-protein ligase ARI8 [Sesamum indicum] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9I0A8 | RanBP-type and C3HC4-type zinc finger-containing protein 1 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04064 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology