Basic Information
Locus ID:
jg14548
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 11094740 | 11100140 | + | jg14548 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 89,808.85 Da | 31.47 | 87.85 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 533 | 802 | 2.54709E-85 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 530 | 800 | 3.6E-45 | IPR001245 |
| Pfam | PF12819 | Malectin-like domain | 34 | 251 | 8.5E-7 | IPR024788 |
| Pfam | PF11721 | Malectin domain | 276 | 342 | 8.4E-7 | IPR021720 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 504 | 800 | 2.32E-77 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 606 | 805 | 1.7E-57 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 31 | 200 | 1.1E-20 | - |
| Gene3D | G3DSA:2.60.120.430 | - | 260 | 369 | 1.3E-10 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 490 | 605 | 1.4E-31 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 527 | 805 | 37.290451 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 649 | 661 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 533 | 558 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G17220.2 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_051130821.1 | putative receptor-like protein kinase At5g39000 isoform X2 [Andrographis paniculata] | 0 |
| Q9SII6 | Probable serine/threonine-protein kinase PIX13 OS=Arabidopsis thaliana OX=3702 GN=PIX13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A830CMI2 | Probable galacturonosyltransferase 3 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002328800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||