Basic Information
Locus ID:
jg14464
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Major Facilitator Superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 9925159 | 9934378 | + | jg14464 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 58,260.87 Da | 29.17 | 115.67 | 0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 18 | 405 | 1.66117E-55 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 52 | 372 | 4.9E-23 | IPR011701 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 51 | 384 | 1.96E-33 | IPR036259 |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 46 | 403 | 3.8E-34 | IPR036259 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 430 | 8.506297 | IPR020846 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 84 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 356 | 379 | 6.4E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 296 | 317 | 6.4E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 50 | 69 | 6.4E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 81 | 105 | 6.4E-5 | IPR001958 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011076924.1 | hippocampus abundant transcript-like protein 1 [Sesamum indicum] | 0 |
| P51563 | Tetracycline resistance protein, class G OS=Vibrio anguillarum OX=55601 GN=tetA PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9T4B9 | hippocampus abundant transcript-like protein 1 OS=Sesamum indicum OX=4182 GN=LOC105161056 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology