Basic Information
Locus ID:
jg14380
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 8558922 | 8599464 | + | jg14380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.02 | 133,215.36 Da | 45.01 | 77.72 | -0.63 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 216 | 544 | 1.89492E-157 | - |
| CDD | cd00121 | MATH | 76 | 198 | 1.58992E-36 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 218 | 539 | 6.0E-44 | IPR001394 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 643 | 895 | 7.1E-75 | IPR024729 |
| Pfam | PF00917 | MATH domain | 80 | 199 | 4.6E-18 | IPR002083 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 905 | 1115 | 6.7E-53 | IPR029346 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 213 | 569 | 3.14E-92 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 71 | 202 | 4.09E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 821 | 918 | 1.1E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 703 | 820 | 8.2E-41 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 214 | 543 | 1.6E-84 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 72 | 213 | 4.7E-49 | IPR008974 |
| SMART | SM00061 | math_3 | 78 | 179 | 2.0E-16 | IPR002083 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 73 | 198 | 37.062256 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 218 | 542 | 38.815784 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 219 | 234 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 458 | 475 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 51 | - | - |
| Coils | Coil | Coil | 558 | 583 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_011076881.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Sesamum indicum] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9T475 | ubiquitinyl hydrolase 1 OS=Sesamum indicum OX=4182 GN=LOC105161025 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology