Basic Information
Locus ID:
jg1430
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 9368290 | 9369195 | + | jg1430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 32,968.76 Da | 62.44 | 50.60 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 253 | 290 | 1.5728E-8 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 251 | 294 | 9.8E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 233 | 297 | 3.31E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 301 | 1.7E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 290 | 2.3E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 291 | 10.527129 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 189 | 204 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 78 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G25030.3 | - | 0 |
| RefSeq | XP_012833521.1 | PREDICTED: transcription initiation factor TFIID subunit 11-like [Erythranthe guttata] | 0 |
| TrEMBL | A0A022RKT2 | RING-type domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a023459mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology