Basic Information
Locus ID:
jg14085
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
40S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 2389261 | 2391633 | + | jg14085 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.36 | 19,386.46 Da | 57.99 | 83.59 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00338 | Ribosomal protein S10p/S20e | 72 | 166 | 1.1E-27 | IPR027486 |
| SUPERFAMILY | SSF54999 | Ribosomal protein S10 | 70 | 167 | 1.57E-30 | IPR036838 |
| Gene3D | G3DSA:3.30.70.600 | Ribosomal protein S10 domain | 54 | 169 | 4.9E-49 | IPR036838 |
| SMART | SM01403 | Ribosomal_S10_2 | 72 | 166 | 1.3E-38 | IPR027486 |
| TIGRFAM | TIGR01046 | uS10_euk_arch: ribosomal protein uS10 | 69 | 167 | 8.1E-40 | IPR005729 |
| ProSitePatterns | PS00361 | Ribosomal protein S10 signature. | 94 | 109 | - | IPR018268 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 105 | 120 | 1.1E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 127 | 141 | 1.1E-13 | IPR001848 |
| PRINTS | PR00971 | Ribosomal protein S10 family signature | 70 | 83 | 1.1E-13 | IPR001848 |
| Hamap | MF_00508 | 30S ribosomal protein S10 [rpsJ]. | 68 | 167 | 18.468796 | IPR001848 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 42 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G47370.1 | Ribosomal protein S10p/S20e family protein. | 0 |
| RefSeq | XP_011101129.1 | 40S ribosomal protein S20-2 [Sesamum indicum] | 0 |
| Q9STY6 | Small ribosomal subunit protein uS10y OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8HWX7 | 40S ribosomal protein S20-2 OS=Gossypium hirsutum OX=3635 GN=LOC107888758 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology