Basic Information
Locus ID:
jg14043
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 1980945 | 1985923 | + | jg14043 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 47,372.00 Da | 38.56 | 75.10 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 302 | 336 | 2.5E-4 | IPR001680 |
| Pfam | PF18345 | Zinc finger domain | 112 | 130 | 4.3E-7 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 265 | 297 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 140 | 176 | 3.9E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 426 | 4.03E-49 | IPR036322 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 106 | 131 | 1.06E-6 | IPR036855 |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 198 | 1.3E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 202 | 431 | 9.7E-37 | IPR015943 |
| Gene3D | G3DSA:3.30.1370.210 | - | 10 | 62 | 1.5E-5 | - |
| Gene3D | G3DSA:2.30.30.1190 | - | 81 | 135 | 4.4E-5 | - |
| SMART | SM00356 | c3hfinal6 | 26 | 51 | 0.59 | IPR000571 |
| SMART | SM00320 | WD40_4 | 137 | 176 | 2.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 424 | 7.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 108 | 132 | 4.7E-4 | IPR000571 |
| SMART | SM00320 | WD40_4 | 216 | 253 | 3.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 300 | 337 | 8.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 297 | 0.0029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 341 | 384 | 5.2 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 307 | 336 | 9.205141 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 144 | 176 | 11.523771 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 306 | 10.942887 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 144 | 185 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 26 | 52 | 11.187677 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 106 | 133 | 14.267303 | IPR000571 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 284 | 298 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 163 | 177 | 3.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 324 | 338 | 3.0E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_051143500.1 | zinc finger CCCH domain-containing protein 48-like [Andrographis paniculata] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9IAM3 | Cdc4 and related F-box and WD-40 protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_00427 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology