Basic Information
Locus ID:
jg14016
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine-rich repeat receptor protein kinase exs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 1761353 | 1765264 | - | jg14016 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 131,367.06 Da | 31.37 | 108.47 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 711 | 769 | 2.4E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 1074 | 1204 | 8.7E-12 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 529 | 588 | 1.6E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 643 | 697 | 3.1E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 30 | 67 | 6.6E-11 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 45 | 362 | 1.7E-54 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 635 | 917 | 6.35E-64 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 371 | 698 | 6.2E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1013 | 1209 | 2.91E-35 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 637 | 705 | 1.0E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 706 | 805 | 1.2E-25 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1075 | 1209 | 3.5E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 85 | 363 | 1.9E-80 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 84 | 5.9E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 364 | 636 | 1.7E-74 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1007 | 1074 | 8.5E-9 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 806 | 925 | 1.1E-32 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 732 | 755 | 37.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 830 | 854 | 69.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 313 | 337 | 210.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 576 | 598 | 300.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 551 | 575 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 599 | 623 | 140.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 878 | 903 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 120 | 144 | 13.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 96 | 119 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 684 | 707 | 16.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 684 | 705 | 700.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 854 | 880 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 120 | 146 | 110.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 168 | 183 | 610.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 192 | 222 | 270.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 756 | 775 | 290.0 | - |
| SMART | SM00369 | LRR_typ_2 | 217 | 241 | 230.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 96 | 119 | 460.0 | - |
| SMART | SM00369 | LRR_typ_2 | 168 | 192 | 22.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 575 | 598 | 190.0 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 909 | 1212 | 12.103664 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1031 | 1054 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 684 | 697 | 9.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 578 | 591 | 9.1E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_011076203.1 | leucine-rich repeat receptor protein kinase EMS1 [Sesamum indicum] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T2H0 | leucine-rich repeat receptor protein kinase EMS1 OS=Sesamum indicum OX=4182 GN=LOC105160501 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |