Basic Information
Locus ID:
jg13926
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 1147230 | 1154987 | + | jg13926 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 99,060.45 Da | 44.91 | 84.16 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 637 | 743 | 3.0427E-16 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 639 | 683 | 6.2E-14 | IPR003959 |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 687 | 742 | 3.2E-6 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 765 | 807 | 1.4E-12 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 599 | 809 | 5.49E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 686 | 830 | 3.2E-39 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 744 | 827 | 3.2E-39 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 598 | 683 | 1.2E-34 | IPR027417 |
| SMART | SM00382 | AAA_5 | 635 | 745 | 1.2E-8 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 715 | 734 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 308 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 806 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 531 | 566 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G28000.1 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_011076079.1 | putative cell division cycle ATPase [Sesamum indicum] | 0 |
| Q7ZZ25 | Outer mitochondrial transmembrane helix translocase OS=Danio rerio OX=7955 GN=atad1a PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SZ08 | putative cell division cycle ATPase OS=Sesamum indicum OX=4182 GN=LOC105160411 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology