Basic Information
Locus ID:
jg13886
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
CS domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 832743 | 838325 | + | jg13886 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 55,872.60 Da | 38.35 | 82.16 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06467 | p23_NUDC_like | 339 | 423 | 1.60659E-38 | - |
| Pfam | PF04969 | CS domain | 338 | 412 | 6.2E-18 | IPR007052 |
| Pfam | PF06974 | WS/DGAT C-terminal domain | 2 | 146 | 4.9E-49 | IPR009721 |
| SUPERFAMILY | SSF49764 | HSP20-like chaperones | 321 | 438 | 8.58E-37 | IPR008978 |
| Gene3D | G3DSA:2.60.40.790 | - | 330 | 457 | 3.7E-43 | IPR008978 |
| ProSiteProfiles | PS51203 | CS domain profile. | 334 | 423 | 16.987398 | IPR007052 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 274 | 328 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53400.1 | HSP20-like chaperones superfamily protein. Encodes BOBBER1 (BOB1), a non-canonical small heat shock protein required for both development and thermotolerance. BOB1 is cytoplasmic at basal temperatures but forms heat shock granules containing canonical small heat shock proteins at high temperatures. | 0 |
| RefSeq | XP_011075994.1 | protein BOBBER 1 [Sesamum indicum] | 0 |
| Q9LV09 | Protein BOBBER 1 OS=Arabidopsis thaliana OX=3702 GN=BOB1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T1Y3 | protein BOBBER 1 OS=Sesamum indicum OX=4182 GN=LOC105160361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg10253, jg13886, jg33931 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_3306 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018630 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g052060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg42066, Sbi_jg48124 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg27481 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00020062 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl01347, Sgl06425, Sgl06429 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000002823, gene:ENSEOMG00000025603 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0005070, CQ.Regalona.r1.3BG0005080 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30164490 |
| Apiaceae | Apium graveolens | 3 | Ag10G02521, Ag3G02043, Ag4G02667 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G007810, COCNU_03G005570 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103700242, gene-LOC103721229 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_03.1670.V1.1, AsparagusV1_07.3545.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G18396 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G27890.1, AT5G53400.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014254m.g.v1.0, Thhalv10025870m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp2g03220.v2.2, Sp6g15540.v2.2, Sp7g25860.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g031720.2N, BniB05g009540.2N, BniB05g032700.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G1632 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G1766 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g11270 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0042s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g11660 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.672 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00039436, Pov_00041150 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G04187 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.919, BH06.951, CH06.1045 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0514830, gene-QOZ80_6BG0466540 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0323630.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_028929 |
| Poaceae | Oryza coarctata | 3 | Oco04G022050, Oco11G005970, Oco12G006010 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g51000.1, LOC_Os06g12530.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G097500 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0404761, Pt_Chr0404772, Pt_Chr0603407 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G019500, Chr14G004470, Chr21G003850 |
| Poaceae | Thinopyrum elongatum | 3 | Tel3E01G826900, Tel3E01G827000, Tel7E01G348500 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC3AG071430, gene_TRIDC3AG071440 ... |
| Poaceae | Triticum aestivum | 9 | TraesCS3A02G502900.1.cds1, TraesCS3A02G503000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb279760_P002, Zm00001eb372220_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-35135 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31632 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1540, evm.TU.LG02.753, evm.TU.LG11.1665 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g24440 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_11_RagTag.159, evm.TU.Scaffold_1_RagTag.628 ... |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14367, nbisL1-mrna-7501 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15209 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5649 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000012l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011184 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16897, nbisL1-mrna-8406 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19075, nbisL1-mrna-748 |
| Salicaceae | Populus euphratica | 3 | populus_peu03281, populus_peu28035, populus_peu34121 |
| Solanaceae | Lycium barbarum | 6 | gene-LOC132609849, gene-LOC132610490, gene-LOC132611005 ... |
| Solanaceae | Solanum chilense | 4 | SOLCI002031800, SOLCI002031900, SOLCI004703900 ... |
| Solanaceae | Solanum pennellii | 4 | gene-LOC107009964, gene-LOC107015157, gene-LOC107030486 ... |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_9965 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1521, TC08G1393 |
| Zosteraceae | Zostera marina | 3 | Zosma03g30870.v3.1, Zosma05g16080.v3.1, Zosma06g15200.v3.1 |