Basic Information
Locus ID:
jg13878
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 755880 | 766266 | + | jg13878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.76 | 172,415.50 Da | 44.12 | 69.25 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1390 | 1486 | 2.9E-14 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 952 | 1517 | 1.79E-31 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 939 | 1196 | 1.1E-85 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1350 | 1512 | 6.4E-62 | - |
| SMART | SM00384 | AT_hook_2 | 439 | 451 | 87.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1054 | 1503 | 1.3E-67 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 409 | 421 | 2.2 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 611 | 623 | 66.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 362 | 374 | 28.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 524 | 536 | 12.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 652 | 664 | 340.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 111 | 123 | 1.5 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 302 | 314 | 6.8 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 138 | 150 | 11.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 332 | 344 | 270.0 | IPR017956 |
| ProSiteProfiles | PS50835 | Ig-like domain profile. | 1095 | 1253 | 6.523858 | IPR007110 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1073 | 1503 | 22.93709 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 708 | 755 | 9.361642 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 11 | 58 | 11.452814 | IPR014977 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 354 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 107 | 152 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_020549011.1 | uncharacterized protein LOC105160354 [Sesamum indicum] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8UYL0 | uncharacterized protein LOC105160354 OS=Sesamum indicum OX=4182 GN=LOC105160354 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology