Basic Information
Locus ID:
jg13806
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Legume lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 295749 | 304226 | + | jg13806 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.63 | 76,648.81 Da | 46.78 | 79.67 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06899 | lectin_legume_LecRK_Arcelin_ConA | 112 | 298 | 6.70434E-51 | IPR001220 |
| Pfam | PF00139 | Legume lectin domain | 130 | 299 | 6.5E-35 | IPR001220 |
| SUPERFAMILY | SSF49899 | Concanavalin A-like lectins/glucanases | 129 | 299 | 2.59E-36 | IPR013320 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 384 | 635 | 2.2E-19 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 374 | 444 | 7.6E-7 | - |
| Gene3D | G3DSA:2.60.120.200 | - | 98 | 304 | 6.8E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 445 | 607 | 6.6E-15 | - |
| ProSitePatterns | PS00307 | Legume lectins beta-chain signature. | 183 | 189 | - | IPR019825 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 627 | 652 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 702 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06740.1 | Concanavalin A-like lectin protein kinase family protein. | 0 |
| RefSeq | XP_011075871.1 | L-type lectin-domain containing receptor kinase VIII.2 [Sesamum indicum] | 0 |
| Q9FG33 | Probable L-type lectin-domain containing receptor kinase S.5 OS=Arabidopsis thaliana OX=3702 GN=LECRKS5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9T1M0 | L-type lectin-domain containing receptor kinase VIII.2 OS=Sesamum indicum OX=4182 GN=LOC105160260 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13806, jg2103 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16326 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah018451 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g050710 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg14927, Sbi_jg55732 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg26256 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017886 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl01175, Sgl06262 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000045054 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0006630, CQ.Regalona.r1.3BG0006640 |
| Asteraceae | Flaveria trinervia | 1 | Ftri9G28214 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1309 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G16377 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.302, evm.TU.LG09.1536 |
| Salicaceae | Populus euphratica | 1 | populus_peu27946 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632200 |
| Solanaceae | Solanum chilense | 1 | SOLCI000118400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014820, gene-LOC107014837 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13433_chr07_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G1273 |