Basic Information
Locus ID:
jg13795
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 253661 | 255769 | + | jg13795 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 49,965.54 Da | 54.36 | 77.30 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 146 | 426 | 3.7871E-41 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 173 | 231 | 1.3E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 256 | 290 | 2.1E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 303 | 341 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 391 | 426 | 0.0033 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 137 | 430 | 3.97E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 82 | 429 | 1.3E-122 | IPR015943 |
| SMART | SM00320 | WD40_4 | 209 | 247 | 3.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 387 | 426 | 1.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 299 | 341 | 1.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 2.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 167 | 206 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 121 | 162 | 360.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 384 | 410.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 394 | 427 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 394 | 427 | 10.100143 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 258 | 290 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 174 | 206 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 258 | 290 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 174 | 215 | 11.611251 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 413 | 427 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_011075818.1 | cell division cycle 20.2, cofactor of APC complex [Sesamum indicum] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T1I4 | cell division cycle 20.2, cofactor of APC complex OS=Sesamum indicum OX=4182 GN=LOC105160231 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology