Basic Information
Locus ID:
jg13794
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr23 | 224236 | 251212 | + | jg13794 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 171,466.20 Da | 48.41 | 72.54 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 1071 | 1126 | 6.13984E-30 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 1072 | 1125 | 5.7E-9 | IPR023780 |
| Pfam | PF00855 | PWWP domain | 12 | 94 | 1.0E-8 | IPR000313 |
| Pfam | PF01426 | BAH domain | 805 | 916 | 6.2E-10 | IPR001025 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 1139 | 1497 | 2.6E-31 | IPR001525 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 11 | 118 | 4.45E-9 | - |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 966 | 1496 | 4.21E-75 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 1069 | 1134 | 3.07E-11 | IPR016197 |
| Gene3D | G3DSA:2.30.30.490 | - | 733 | 904 | 7.3E-47 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 968 | 1513 | 9.3E-232 | - |
| Gene3D | G3DSA:2.30.30.140 | - | 3 | 123 | 8.2E-10 | - |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 1290 | 1462 | 9.3E-232 | - |
| SMART | SM00298 | chromo_7 | 1071 | 1130 | 4.4E-10 | IPR000953 |
| SMART | SM00439 | BAH_4 | 802 | 919 | 1.9E-23 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 1072 | 1125 | 12.557501 | IPR000953 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 966 | 1503 | 44.962059 | IPR001525 |
| ProSiteProfiles | PS50812 | PWWP domain profile. | 13 | 68 | 10.235195 | IPR000313 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 802 | 919 | 17.68335 | IPR001025 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 1095 | 1115 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1185 | 1199 | 3.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 967 | 983 | 3.7E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 1231 | 1244 | 3.7E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 277 | 313 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 534 | 578 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 533 | 593 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19020.2 | - | 0 |
| RefSeq | XP_011075807.1 | DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Sesamum indicum] | 0 |
| Q94F87 | DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana OX=3702 GN=CMT2 PE=2 SV=3 | 0 | |
| TrEMBL | A0A5A7PM91 | Cytosine-specific methyltransferase OS=Striga asiatica OX=4170 GN=STAS_09606 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology