Basic Information
Locus ID:
jg13722
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_14863_HRSCAF_14934 | 2343 | 3268 | + | jg13722 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 27,437.82 Da | 38.09 | 84.34 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00464 | SK | 6 | 147 | 8.75405E-53 | IPR000623 |
| Pfam | PF01202 | Shikimate kinase | 13 | 161 | 1.5E-39 | IPR031322 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 5 | 160 | 3.18E-22 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2 | 164 | 3.3E-44 | IPR027417 |
| SMART | SM00382 | AAA_5 | 3 | 133 | 0.0016 | IPR003593 |
| ProSitePatterns | PS01128 | Shikimate kinase signature. | 60 | 85 | - | IPR023000 |
| PRINTS | PR01100 | Shikimate kinase family signature | 59 | 67 | 3.1E-19 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 7 | 22 | 3.1E-19 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 77 | 86 | 3.1E-19 | - |
| PRINTS | PR01100 | Shikimate kinase family signature | 31 | 44 | 3.1E-19 | - |
| Hamap | MF_00109 | Shikimate kinase [aroK]. | 4 | 161 | 24.935009 | IPR000623 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_024392957.1 | shikimate kinase, chloroplastic-like [Physcomitrium patens] | 0 |
| Q5QV48 | Shikimate kinase OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) OX=283942 GN=aroK PE=3 SV=1 | 0 | |
| TrEMBL | A0A423PQU4 | Shikimate kinase OS=Salinisphaera japonica YTM-1 OX=1209778 GN=aroK PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13722, jg1948, jg6682, jg6803 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1685 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022961 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004200 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4554, Sbi_jg49280 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5962 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000484 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11036, Sgl16444 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015365, gene:ENSEOMG00000033132 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003240, CQ.Regalona.r1.2BG0025240 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30055880, pistato.v30242870 |
| Apiaceae | Apium graveolens | 1 | Ag6G00193 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G007680 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103717359, gene-LOC120107065 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G11052 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G00234.1, AT4G00290.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028609m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g00340.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g042160.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0974 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G1002, Cgl02G1024 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g07650 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.831 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001441 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G03559, Lb1G07413 |
| Poaceae | Echinochloa crus-galli | 6 | AH07.3004, AH09.2026, BH07.2829, BH09.2185, CH07.2909 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2BG0196560, gene-QOZ80_4AG0306570 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0186360.1, HORVU.MOREX.r3.7HG0715930.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_045752, gene-QYE76_045772 |
| Poaceae | Oryza coarctata | 4 | Oco03G018230, Oco04G018980, Oco07G013860, Oco08G013370 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g45690.1, LOC_Os04g48940.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G238700, gene-BS78_06G196200 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0307294, Pt_Chr0503701, Pt_Chr0703612 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G023470, Chr23G005920, Chr26G013680 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G679400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG057290, gene_TRIDC2BG060130 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G395900.1, TraesCS2B02G414200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb073200_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-22257, nbis-gene-22634 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g16881, Zma_g20288 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG19.947, evm.TU.LG24.949 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g02210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.531 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21649 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-91 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7343 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.251 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017544 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1749 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19619 |
| Salicaceae | Populus euphratica | 1 | populus_peu27659 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632659 |
| Solanaceae | Solanum chilense | 1 | SOLCI005830600 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107002245, gene-LOC107002246 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1408 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2212 |
| Zosteraceae | Zostera marina | 1 | Zosma07g00380.v3.1 |