Basic Information
Locus ID:
jg13574
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Serine threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15634474 | 15641417 | + | jg13574 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 64,593.72 Da | 46.55 | 71.64 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 541 | 1.68E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 80 | 551 | 5.3E-25 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 68 | 5.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 306 | 346 | 4.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 407 | 461 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 107 | 147 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 365 | 403 | 180.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 12 | 258 | 1.0E-65 | IPR000009 |
| PIRSF | PIRSF037309 | PPA2_B55 | 255 | 549 | 1.0E-120 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 107 | 121 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 237 | 264 | 1.6E-56 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 123 | 151 | 1.6E-56 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 517 | 546 | 1.6E-56 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 94 | 122 | 1.6E-56 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 47 | 67 | 1.6E-56 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 498 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_011080237.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Sesamum indicum] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9T9V7 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sesamum indicum OX=4182 GN=LOC105163538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology