Basic Information
Locus ID:
jg13528
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15324101 | 15342922 | - | jg13528 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 160,999.13 Da | 33.34 | 80.88 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13169 | RanBD_NUP50_plant | 1321 | 1435 | 1.06624E-65 | - |
| CDD | cd00200 | WD40 | 81 | 361 | 3.03923E-69 | - |
| Pfam | PF04053 | Coatomer WD associated region | 383 | 827 | 3.5E-162 | IPR006692 |
| Pfam | PF08911 | NUP50 (Nucleoporin 50 kDa) | 1033 | 1094 | 6.0E-11 | IPR015007 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 320 | 1.0E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 198 | 235 | 4.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 279 | 8.2E-6 | IPR001680 |
| Pfam | PF00638 | RanBP1 domain | 1319 | 1435 | 1.2E-16 | IPR000156 |
| Pfam | PF00400 | WD domain, G-beta repeat | 155 | 191 | 1.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 66 | 361 | 4.48E-79 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 291 | 552 | 1.83E-17 | IPR036322 |
| SUPERFAMILY | SSF50729 | PH domain-like | 1310 | 1435 | 1.95E-30 | - |
| Gene3D | G3DSA:1.25.40.470 | - | 654 | 862 | 8.1E-81 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 75 | 364 | 1.6E-113 | IPR015943 |
| Gene3D | G3DSA:2.30.29.30 | - | 1251 | 1435 | 4.6E-38 | IPR011993 |
| SMART | SM00320 | WD40_4 | 282 | 321 | 3.3E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 152 | 191 | 9.7E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 110 | 149 | 0.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 279 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 5.3E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 68 | 107 | 0.49 | IPR001680 |
| SMART | SM00160 | ranbd_3 | 1309 | 1434 | 2.5E-17 | IPR000156 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 159 | 191 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 330 | 15.855363 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 116 | 8.603614 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 320 | 12.710129 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 244 | 13.649761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 245 | 282 | 8.887423 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 202 | 236 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 159 | 191 | 10.601049 | - |
| ProSiteProfiles | PS50196 | Ran binding domain type 1 profile. | 1311 | 1440 | 18.223139 | IPR000156 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 245 | 288 | 11.912015 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 308 | 322 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 222 | 236 | 5.7E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 266 | 280 | 5.7E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1193 | 1221 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1286 | 1310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1228 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_011080919.1 | coatomer subunit beta'-1 isoform X2 [Sesamum indicum] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6A6LLG0 | RanBD1 domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_022511 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology