Basic Information
Locus ID:
jg13488
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
TPL
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 15072257 | 15079351 | + | jg13488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 124,634.29 Da | 39.41 | 79.77 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 914 | 947 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF63829 | Calcium-dependent phosphotriesterase | 349 | 593 | 4.25E-24 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 521 | 952 | 1.57E-37 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 973 | 1119 | 1.33E-6 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 807 | 1096 | 1.7E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 341 | 569 | 4.7E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 570 | 686 | 2.3E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 820 | 862 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 6.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 9.8E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.0039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1056 | 1093 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 999 | 1040 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 908 | 947 | 1.9E-5 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 63.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 865 | 905 | 1.6 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 5.9E-15 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 915 | 947 | 11.64467 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.34942 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 915 | 947 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.862345 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 478 | 492 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1104 | 1131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1098 | 1131 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011073378.1 | protein TOPLESS [Sesamum indicum] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9SSC8 | protein TOPLESS OS=Sesamum indicum OX=4182 GN=LOC105158348 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology