Basic Information
Locus ID:
jg13428
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 14505384 | 14513861 | - | jg13428 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 114,600.32 Da | 40.48 | 81.75 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 38 | 314 | 0.0 | - |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 39 | 351 | 5.0E-92 | IPR000602 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 356 | 446 | 5.8E-20 | IPR015341 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1009 | 1.6E-11 | IPR041147 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 603 | 820 | 1.5E-44 | IPR011682 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 355 | 449 | 3.92E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 27 | 352 | 5.63E-102 | IPR011330 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1011 | 2.98E-142 | IPR011013 |
| Gene3D | G3DSA:2.60.40.1360 | - | 889 | 1014 | 7.1E-34 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 38 | 319 | 8.4E-120 | IPR027291 |
| Gene3D | G3DSA:2.70.98.30 | - | 600 | 869 | 2.9E-94 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 475 | 597 | 1.2E-26 | IPR013780 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 452 | 3.5E-22 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 320 | 398 | 1.4E-28 | IPR037094 |
| SMART | SM00872 | Alpha_mann_mid_2 | 356 | 430 | 5.5E-24 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_011083026.1 | probable alpha-mannosidase At5g13980 [Sesamum indicum] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TE96 | Alpha-mannosidase OS=Sesamum indicum OX=4182 GN=LOC105165643 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology