Basic Information
Locus ID:
jg13374
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
K-box region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 14145361 | 14147244 | + | jg13374 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.66 | 22,508.69 Da | 42.94 | 82.13 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00265 | MADS_MEF2_like | 2 | 70 | 7.65772E-39 | IPR033896 |
| Pfam | PF01486 | K-box region | 86 | 171 | 1.2E-21 | IPR002487 |
| Pfam | PF00319 | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | 5.3E-25 | IPR002100 |
| SUPERFAMILY | SSF55455 | SRF-like | 2 | 91 | 3.92E-31 | IPR036879 |
| Gene3D | G3DSA:3.40.1810.10 | - | 13 | 82 | 3.8E-26 | IPR036879 |
| SMART | SM00432 | madsneu2 | 1 | 60 | 1.7E-37 | IPR002100 |
| ProSiteProfiles | PS51297 | K-box domain profile. | 87 | 177 | 13.519442 | IPR002487 |
| ProSiteProfiles | PS50066 | MADS-box domain profile. | 1 | 61 | 30.68363 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 3 | 23 | 1.0E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 23 | 38 | 1.0E-28 | IPR002100 |
| PRINTS | PR00404 | MADS domain signature | 38 | 59 | 1.0E-28 | IPR002100 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 176 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 197 | - | - |
| Coils | Coil | Coil | 143 | 177 | - | - |
| Coils | Coil | Coil | 87 | 114 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45650.1 | AGAMOUS-like 6. sequence suggests this encodes a MADS-box transcription factor | 0 |
| RefSeq | XP_042001044.1 | truncated transcription factor CAULIFLOWER A-like isoform X1 [Salvia splendens] | 0 |
| F6I457 | Agamous-like MADS-box protein AGL11 OS=Vitis vinifera OX=29760 GN=AGL11 PE=2 SV=1 | 0 | |
| TrEMBL | Q0JRW1 | Deficiens H7 homologue OS=Misopates orontium OX=102599 GN=defh7 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology