Basic Information
Locus ID:
jg13288
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 13556986 | 13563408 | - | jg13288 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.92 | 70,457.41 Da | 52.62 | 79.17 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03334 | Fab1_TCP | 332 | 604 | 1.51152E-142 | - |
| Pfam | PF01363 | FYVE zinc finger | 33 | 102 | 1.2E-17 | IPR000306 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 353 | 593 | 1.9E-33 | IPR002423 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 398 | 570 | 2.51E-42 | IPR027409 |
| SUPERFAMILY | SSF54849 | GroEL-intermediate domain like | 353 | 590 | 6.41E-5 | IPR027410 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 31 | 104 | 5.76E-21 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 106 | 1.0E-21 | IPR013083 |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 397 | 570 | 9.4E-55 | IPR027409 |
| SMART | SM00064 | fyve_4 | 28 | 103 | 6.5E-21 | IPR000306 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 36 | 102 | 12.859591 | IPR017455 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 230 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 208 | 225 | - | - |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_011079355.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B [Sesamum indicum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2Z7CGG6 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Dorcoceras hygrometricum OX=472368 GN=F511_09911 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology