Basic Information
Locus ID:
jg13282
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 13529213 | 13532065 | + | jg13282 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 39,504.84 Da | 47.73 | 83.25 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 96 | 138 | 3.08139E-18 | - |
| Pfam | PF13639 | Ring finger domain | 95 | 138 | 4.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 143 | 1.97E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 74 | 146 | 9.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 137 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 138 | 11.987676 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011072704.1 | RING-H2 finger protein ATL3 [Sesamum indicum] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9STL8 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105157887 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology