Basic Information
Locus ID:
jg13099
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11773615 | 11777492 | + | jg13099 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.56 | 19,675.48 Da | 70.28 | 85.29 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 18 | 154 | 1.03558E-72 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 19 | 152 | 9.8E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 7 | 154 | 4.85E-62 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 4 | 158 | 1.9E-65 | IPR016135 |
| SMART | SM00212 | ubc_7 | 18 | 160 | 5.1E-62 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 15 | 161 | 56.062454 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 88 | 103 | - | IPR023313 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G02760.1 | ubiquiting-conjugating enzyme 2. ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. | 0 |
| RefSeq | XP_016736213.1 | ubiquitin-conjugating enzyme E2 2 [Gossypium hirsutum] | 0 |
| P42745 | Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana OX=3702 GN=UBC2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A314YV04 | UBC core domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_14578 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology