Basic Information
Locus ID:
jg13051
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 11239467 | 11240375 | - | jg13051 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 32,869.62 Da | 48.52 | 88.78 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 95 | 138 | 4.05295E-16 | - |
| Pfam | PF13639 | Ring finger domain | 95 | 138 | 5.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 75 | 144 | 1.01E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 143 | 3.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 96 | 137 | 1.2E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 96 | 138 | 12.430266 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011071820.1 | RING-H2 finger protein ATL47 [Sesamum indicum] | 0 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SWB6 | RING-H2 finger protein ATL47 OS=Sesamum indicum OX=4182 GN=LOC105157184 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology