Basic Information
Locus ID:
jg12909
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 7310033 | 7313842 | - | jg12909 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 118,458.92 Da | 40.74 | 110.91 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 125 | 147 | 0.76 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 72 | 7.8E-7 | IPR013210 |
| SUPERFAMILY | SSF52047 | RNI-like | 89 | 401 | 9.42E-56 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 628 | 872 | 3.49E-49 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 285 | 629 | 4.87E-54 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 241 | 8.0E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 729 | 883 | 3.2E-35 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 950 | 1003 | 9.1E-6 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1004 | 1082 | 1.4E-6 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 32 | 186 | 7.2E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 242 | 319 | 8.4E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 320 | 385 | 1.2E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 386 | 728 | 4.4E-89 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 552 | 576 | 4.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 123 | 147 | 16.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 710 | 732 | 340.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 243 | 267 | 230.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 409 | 433 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 600 | 624 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 171 | 195 | 160.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 733 | 757 | 45.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 684 | 708 | 39.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 291 | 315 | 35.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 805 | 829 | 39.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 125 | 148 | 7.157505 | IPR001611 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58150.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011084195.2 | leucine-rich repeat receptor protein kinase MSP1-like [Sesamum indicum] | 0 |
| Q8RZV7 | Leucine-rich repeat receptor protein kinase MSP1 OS=Oryza sativa subsp. japonica OX=39947 GN=MSP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TG09 | leucine-rich repeat receptor protein kinase MSP1-like OS=Sesamum indicum OX=4182 GN=LOC105166514 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |