Basic Information
Locus ID:
jg12882
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6198128 | 6202261 | + | jg12882 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.22 | 88,281.40 Da | 43.90 | 82.62 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 341 | 379 | 0.11 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 46 | 80 | 4.7E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 577 | 653 | 1.8E-12 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 52 | 450 | 1.62E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 577 | 716 | 2.08E-25 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 45 | 338 | 1.1E-67 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 467 | 6.3E-28 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 573 | 737 | 5.7E-33 | - |
| SMART | SM00369 | LRR_typ_2 | 406 | 429 | 8.4 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 203 | 226 | 5.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 129 | 152 | 2.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 106 | 128 | 150.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 385 | 720 | 11.66551 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 493 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011101591.1 | receptor-like kinase TMK4 [Sesamum indicum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UM62 | receptor-like kinase TMK4 OS=Sesamum indicum OX=4182 GN=LOC105179651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology