Basic Information
Locus ID:
jg12881
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 6181300 | 6184349 | + | jg12881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 79,708.61 Da | 39.77 | 82.79 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 48 | 82 | 1.6E-5 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 501 | 605 | 3.2E-24 | IPR000719 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 292 | 330 | 0.098 | IPR013210 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 502 | 676 | 1.17E-38 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 48 | 399 | 8.73E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 47 | 276 | 2.8E-47 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 499 | 702 | 9.7E-46 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 293 | 418 | 6.2E-28 | IPR032675 |
| SMART | SM00220 | serkin_6 | 438 | 719 | 1.1E-6 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 357 | 380 | 9.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 205 | 228 | 8.3 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 131 | 154 | 2.1 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 108 | 130 | 150.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 336 | 680 | 21.050486 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 524 | 536 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 685 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 693 | 707 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011101591.1 | receptor-like kinase TMK4 [Sesamum indicum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UM62 | receptor-like kinase TMK4 OS=Sesamum indicum OX=4182 GN=LOC105179651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology