Basic Information
Locus ID:
jg12835
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5175760 | 5180651 | + | jg12835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.46 | 59,166.62 Da | 53.98 | 67.32 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 284 | 348 | 8.03085E-19 | - |
| CDD | cd16872 | ARID_HMGB9-like | 51 | 134 | 2.50482E-49 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 284 | 351 | 6.8E-13 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 51 | 134 | 2.4E-18 | IPR001606 |
| SUPERFAMILY | SSF47095 | HMG-box | 272 | 356 | 7.46E-20 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 51 | 140 | 9.42E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 268 | 363 | 1.1E-19 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 44 | 153 | 1.7E-27 | IPR036431 |
| SMART | SM00398 | hmgende2 | 283 | 352 | 4.4E-17 | IPR009071 |
| SMART | SM01014 | ARID_2 | 44 | 134 | 6.6E-28 | - |
| SMART | SM00501 | bright_3 | 48 | 139 | 2.6E-29 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 47 | 138 | 26.031172 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 284 | 351 | 14.279321 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 291 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 362 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 263 | 278 | - | - |
| Coils | Coil | Coil | 333 | 353 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_011091442.1 | high mobility group B protein 15 [Sesamum indicum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TYT6 | high mobility group B protein 15 OS=Sesamum indicum OX=4182 GN=LOC105171885 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology