Basic Information
Locus ID:
jg12833
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Small ubiquitin-related modifier 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr7 | 5138551 | 5141203 | + | jg12833 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 11,074.34 Da | 50.34 | 74.00 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 23 | 91 | 2.8E-12 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 8 | 97 | 2.37E-16 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 96 | 8.4E-22 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 21 | 96 | 11.072001 | IPR000626 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_010241412.1 | PREDICTED: small ubiquitin-related modifier 2-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9FLP6 | Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7YNB4 | small ubiquitin-related modifier 2-like isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC104586018 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology